Variant report

Variant	rs4629141
Chromosome Location	chr2:205839718-205839719
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16836679	1.00[EUR][1000 genomes]
rs17638885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757846	chr2:205539832-205841174	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759111	chr2:205539832-205841174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205826400-205845400	Weak transcription	HSMM	muscle
2	chr2:205836600-205842600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:205837800-205842600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:205837800-205842600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:205837800-205846800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr2:205837800-205846800	Weak transcription	NHLF	lung
7	chr2:205838000-205841400	Weak transcription	Pancreas	Pancrea
8	chr2:205838000-205846800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:205838000-205847000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:205838000-205847000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:205838000-205847000	Weak transcription	Left Ventricle	heart
12	chr2:205838000-205847200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:205838400-205846800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr2:205839600-205839800	Weak transcription	Ovary	ovary
15	chr2:205839600-205842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:205839600-205847200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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