Variant report
| Variant | rs16840534 |
|---|---|
| Chromosome Location | chr1:158647729-158647730 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:158647173..158649566-chr1:158944147..158946933,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10047207 | 1.00[MEX][hapmap] |
| rs12090314 | 1.00[MEX][hapmap] |
| rs1332693 | 1.00[MEX][hapmap] |
| rs16840444 | 1.00[MEX][hapmap] |
| rs16840450 | 1.00[MEX][hapmap] |
| rs16840537 | 0.87[AMR][1000 genomes] |
| rs16840610 | 0.85[AMR][1000 genomes] |
| rs16840935 | 1.00[MEX][hapmap] |
| rs2298801 | 0.83[YRI][hapmap] |
| rs55836330 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59577038 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61269449 | 0.85[AMR][1000 genomes] |
| rs6427447 | 1.00[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs6662781 | 1.00[MEX][hapmap] |
| rs73030019 | 0.85[AMR][1000 genomes] |
| rs73030022 | 0.85[AMR][1000 genomes] |
| rs7511640 | 1.00[AMR][1000 genomes] |
| rs7519423 | 1.00[MEX][hapmap] |
| rs7526842 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7531135 | 1.00[YRI][hapmap] |
| rs7544849 | 1.00[MEX][hapmap] |
| rs7547515 | 0.87[AMR][1000 genomes] |
| rs7554084 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3491788 | chr1:158537183-158725907 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3491789 | chr1:158537242-158725858 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv872481 | chr1:158625789-158712510 | Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv872482 | chr1:158635852-158698532 | Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv872483 | chr1:158635852-158712510 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:158634400-158652800 | Strong transcription | K562 | blood |
