Variant report

Variant	rs7554084
Chromosome Location	chr1:158635195-158635196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10047207	1.00[MEX][hapmap]
rs12090314	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1332690	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs1332693	1.00[MEX][hapmap]
rs16840444	1.00[MEX][hapmap]
rs16840450	1.00[MEX][hapmap]
rs16840534	1.00[MEX][hapmap]
rs16840935	1.00[MEX][hapmap]
rs55776487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56297207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56330526	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59907488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61444772	0.85[AMR][1000 genomes]
rs6427447	1.00[MEX][hapmap]
rs6662781	0.93[ASW][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6695815	0.87[ASW][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519423	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522169	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7536211	0.83[YRI][hapmap]
rs7542936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7544849	1.00[MEX][hapmap]
rs7553885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553970	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556197	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7556384	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3491788	chr1:158537183-158725907	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3491789	chr1:158537242-158725858	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv872481	chr1:158625789-158712510	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158634400-158652800	Strong transcription	K562	blood

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