Variant report
| Variant | rs7553970 |
|---|---|
| Chromosome Location | chr1:158635019-158635020 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12090314 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1332690 | 0.84[AFR][1000 genomes];0.92[AMR][1000 genomes] |
| rs55776487 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56297207 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56330526 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56362544 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59907488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61444772 | 0.85[AMR][1000 genomes] |
| rs6662781 | 1.00[AMR][1000 genomes] |
| rs6695815 | 0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6695912 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7519423 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7522169 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7536211 | 0.84[YRI][hapmap] |
| rs7542936 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7553885 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7554084 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7556197 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7556205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7556384 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3491788 | chr1:158537183-158725907 | Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3491789 | chr1:158537242-158725858 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv872481 | chr1:158625789-158712510 | Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:158634400-158652800 | Strong transcription | K562 | blood |
