Variant report

Variant	rs16841049
Chromosome Location	chr4:7760826-7760827
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7760394..7761920-chr4:7766669..7769385,2	K562	blood:
2	chr4:7733646..7736526-chr4:7759484..7762368,2	K562	blood:

Variant related genes	Relation type
ENSG00000184985	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1110362	1.00[AMR][1000 genomes]
rs12644359	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs13435331	1.00[EUR][1000 genomes]
rs16840497	1.00[TSI][hapmap]
rs16840543	1.00[TSI][hapmap]
rs16840589	1.00[TSI][hapmap]
rs16840614	1.00[TSI][hapmap]
rs16840635	1.00[TSI][hapmap]
rs16840725	1.00[EUR][1000 genomes]
rs16840743	1.00[EUR][1000 genomes]
rs16840756	1.00[EUR][1000 genomes]
rs16841058	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16841079	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16841082	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs28495292	1.00[EUR][1000 genomes]
rs4346650	1.00[EUR][1000 genomes]
rs4413390	1.00[EUR][1000 genomes]
rs58145590	1.00[EUR][1000 genomes]
rs6446618	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6814265	1.00[EUR][1000 genomes]
rs6820107	1.00[EUR][1000 genomes]
rs6852138	1.00[EUR][1000 genomes]
rs6857498	1.00[EUR][1000 genomes]
rs73797312	1.00[EUR][1000 genomes]
rs757245	1.00[EUR][1000 genomes]
rs7665954	1.00[AMR][1000 genomes]
rs7675797	1.00[TSI][hapmap]
rs9997721	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv878575	chr4:7715181-7767755	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv878577	chr4:7757650-7771201	Genic enhancers Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7740200-7765000	Weak transcription	Aorta	Aorta
2	chr4:7740600-7762400	Weak transcription	Pancreas	Pancrea
3	chr4:7746200-7772000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:7747200-7761800	Weak transcription	Colonic Mucosa	Colon
5	chr4:7749400-7765600	Weak transcription	Fetal Brain Male	brain
6	chr4:7749400-7767000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:7751800-7761000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:7752800-7767400	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:7753000-7761200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:7753200-7761000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:7754000-7762000	Weak transcription	NHLF	lung
12	chr4:7754200-7765400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:7755400-7763200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:7755400-7768400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:7756000-7761400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:7756000-7766000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:7756200-7762200	Weak transcription	NHEK	skin
18	chr4:7756400-7761400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:7756400-7762200	Weak transcription	HMEC	breast
20	chr4:7756400-7767800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:7756600-7764400	Weak transcription	Esophagus	oesophagus
22	chr4:7756600-7768000	Weak transcription	Brain Angular Gyrus	brain
23	chr4:7757000-7772000	Strong transcription	Brain Germinal Matrix	brain
24	chr4:7757600-7764400	Strong transcription	NH-A	brain
25	chr4:7757600-7765400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:7757600-7765400	Strong transcription	Osteobl	bone
27	chr4:7757600-7770800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:7757600-7779600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:7757800-7768200	Weak transcription	Fetal Heart	heart
30	chr4:7757800-7768600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:7757800-7772000	Strong transcription	Fetal Intestine Small	intestine
32	chr4:7758000-7762600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr4:7758000-7780800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr4:7758200-7764600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr4:7758200-7783200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:7758400-7761000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:7758400-7762000	Strong transcription	A549	lung
38	chr4:7758400-7795400	Weak transcription	Hela-S3	cervix
39	chr4:7758600-7761200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:7758600-7761200	Enhancers	Adipose Nuclei	Adipose
41	chr4:7758600-7762000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr4:7758600-7762200	Enhancers	Colon Smooth Muscle	Colon
43	chr4:7758600-7780600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:7758800-7761000	Enhancers	Primary T cells fromperipheralblood	blood
45	chr4:7758800-7761000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:7758800-7763200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr4:7758800-7763600	Weak transcription	NHDF-Ad	bronchial
48	chr4:7759000-7761000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:7759000-7761000	Weak transcription	K562	blood
50	chr4:7759200-7763600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links