Variant report

Variant	rs16840743
Chromosome Location	chr4:7626563-7626564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10001358	1.00[EUR][1000 genomes]
rs10002144	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10002768	1.00[EUR][1000 genomes]
rs10805000	1.00[EUR][1000 genomes]
rs13435331	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16840543	1.00[EUR][1000 genomes]
rs16840589	1.00[EUR][1000 genomes]
rs16840614	1.00[EUR][1000 genomes]
rs16840635	1.00[EUR][1000 genomes]
rs16840725	1.00[EUR][1000 genomes]
rs16840756	1.00[EUR][1000 genomes]
rs16841049	1.00[EUR][1000 genomes]
rs16841058	1.00[EUR][1000 genomes]
rs16841079	1.00[EUR][1000 genomes]
rs16841082	1.00[EUR][1000 genomes]
rs4234820	1.00[EUR][1000 genomes]
rs4330351	1.00[EUR][1000 genomes]
rs4346650	1.00[EUR][1000 genomes]
rs4572883	1.00[EUR][1000 genomes]
rs4689757	1.00[EUR][1000 genomes]
rs59256904	1.00[EUR][1000 genomes]
rs6446604	1.00[EUR][1000 genomes]
rs6446618	1.00[EUR][1000 genomes]
rs757245	1.00[EUR][1000 genomes]
rs7683873	1.00[EUR][1000 genomes]
rs7690364	1.00[EUR][1000 genomes]
rs7691525	1.00[EUR][1000 genomes]
rs7692130	1.00[EUR][1000 genomes]
rs871943	1.00[EUR][1000 genomes]
rs9884448	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9884644	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9884725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv461213	chr4:7584560-7637297	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593618	chr4:7584560-7637297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7618000-7632200	Weak transcription	Right Atrium	heart
2	chr4:7623000-7629000	Weak transcription	Ovary	ovary
3	chr4:7623200-7626800	Weak transcription	HSMM	muscle
4	chr4:7623200-7629000	Weak transcription	HSMMtube	muscle
5	chr4:7624000-7631200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:7624600-7627600	Enhancers	Brain Germinal Matrix	brain
7	chr4:7625400-7628400	Enhancers	Fetal Brain Male	brain
8	chr4:7625600-7627400	Enhancers	Brain Substantia Nigra	brain
9	chr4:7625800-7626600	Enhancers	Brain Hippocampus Middle	brain
10	chr4:7625800-7627400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr4:7626000-7626600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:7626000-7627400	Enhancers	Brain Angular Gyrus	brain
13	chr4:7626000-7627400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:7626200-7627200	Enhancers	Fetal Stomach	stomach
15	chr4:7626200-7627400	Enhancers	Brain Anterior Caudate	brain
16	chr4:7626200-7627600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:7626400-7626600	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr4:7626400-7627600	Enhancers	Right Ventricle	heart
19	chr4:7626400-7627600	Enhancers	NH-A	brain
20	chr4:7626400-7628200	Enhancers	Fetal Brain Female	brain

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