Variant report

Variant	rs7692130
Chromosome Location	chr4:7564431-7564432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7564031..7566362-chr4:7585647..7587570,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10001358	1.00[EUR][1000 genomes]
rs10002144	1.00[EUR][1000 genomes]
rs10002768	1.00[EUR][1000 genomes]
rs10804999	1.00[EUR][1000 genomes]
rs10805000	1.00[EUR][1000 genomes]
rs13435331	1.00[EUR][1000 genomes]
rs16840543	1.00[EUR][1000 genomes]
rs16840589	1.00[EUR][1000 genomes]
rs16840614	1.00[EUR][1000 genomes]
rs16840635	1.00[EUR][1000 genomes]
rs16840725	1.00[EUR][1000 genomes]
rs16840743	1.00[EUR][1000 genomes]
rs16840756	1.00[EUR][1000 genomes]
rs4234819	1.00[EUR][1000 genomes]
rs4234820	1.00[EUR][1000 genomes]
rs4330351	1.00[EUR][1000 genomes]
rs4572883	1.00[EUR][1000 genomes]
rs4689757	1.00[EUR][1000 genomes]
rs59256904	1.00[EUR][1000 genomes]
rs6446604	1.00[EUR][1000 genomes]
rs7683873	1.00[EUR][1000 genomes]
rs7690364	1.00[EUR][1000 genomes]
rs7691525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7693764	1.00[EUR][1000 genomes]
rs871943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9884448	1.00[EUR][1000 genomes]
rs9884644	1.00[EUR][1000 genomes]
rs9884725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7558200-7565400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:7562600-7565200	Weak transcription	HepG2	liver
3	chr4:7562600-7565600	Weak transcription	Liver	Liver
4	chr4:7563400-7567200	Weak transcription	Fetal Kidney	kidney

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