Variant report

Variant	rs16841713
Chromosome Location	chr1:165223890-165223891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1343547	1.00[EUR][1000 genomes]
rs16841720	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16841798	0.87[LWK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16841929	0.87[LWK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34587265	1.00[EUR][1000 genomes]
rs58659239	1.00[EUR][1000 genomes]
rs59490390	1.00[EUR][1000 genomes]
rs60194298	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73029247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165221800-165224600	Enhancers	Liver	Liver
2	chr1:165222800-165224000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:165222800-165224000	Flanking Active TSS	HepG2	liver
4	chr1:165222800-165224800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:165223000-165224800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:165223000-165226200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:165223400-165224400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:165223600-165224200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr1:165223600-165226400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:165223800-165224200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr1:165223800-165224400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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