Variant report

Variant	rs16841929
Chromosome Location	chr1:165244317-165244318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1123821	1.00[CHD][hapmap]
rs1343547	1.00[EUR][1000 genomes]
rs16841713	0.87[LWK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16841720	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841798	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842100	1.00[AMR][1000 genomes]
rs16842342	1.00[AMR][1000 genomes]
rs16842363	1.00[AMR][1000 genomes]
rs16842378	1.00[AMR][1000 genomes]
rs16843003	1.00[AMR][1000 genomes]
rs34587265	1.00[EUR][1000 genomes]
rs57875687	1.00[AMR][1000 genomes]
rs58659239	1.00[EUR][1000 genomes]
rs59490390	1.00[EUR][1000 genomes]
rs60194298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73029247	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165235000-165245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:165235200-165244600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:165242600-165244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:165242600-165244400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:165243800-165245800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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