Variant report

Variant	rs1123821
Chromosome Location	chr1:165318318-165318319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12125353	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126669	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374068	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16841929	1.00[CHD][hapmap]
rs1948743	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1974080	1.00[CEU][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2225185	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6665237	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6665572	0.87[EUR][1000 genomes]
rs6686310	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66911579	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6693619	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67130162	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7538365	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1123821	USP21	cis	parietal	SCAN
rs1123821	CCR1	trans	lymphoblastoid	seeQTL
rs1123821	NR1I3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165311400-165318800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165315000-165318800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:165317600-165318400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:165317600-165320400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr1:165317800-165318600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr1:165318000-165318400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:165318000-165318400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr1:165318000-165320400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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