Variant report

Variant	rs1948743
Chromosome Location	chr1:165320619-165320620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1123821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125353	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13374068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974080	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665237	0.83[EUR][1000 genomes]
rs6665572	0.87[EUR][1000 genomes]
rs6686310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66911579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67130162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.95[AFR][1000 genomes]
rs73019175	1.00[ASN][1000 genomes]
rs7538365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165318400-165321200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165318800-165320800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:165319600-165321200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr1:165319600-165321400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr1:165320400-165320800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
6	chr1:165320400-165321000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
7	chr1:165320400-165321200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr1:165320400-165323200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:165320600-165320800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:165320600-165321200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr1:165320600-165321200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr1:165320600-165321200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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