Variant report

Variant	rs13374068
Chromosome Location	chr1:165317255-165317256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1123821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125353	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126669	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974080	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665237	0.83[EUR][1000 genomes]
rs6665572	0.87[EUR][1000 genomes]
rs6686310	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66911579	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693619	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67130162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.93[AFR][1000 genomes]
rs73019175	1.00[ASN][1000 genomes]
rs7538365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335311	chr1:165317131-165317274	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3453418	chr1:165317156-165317259	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1310421	chr1:165317170-165317255	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3453419	chr1:165317170-165317256	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165311400-165318800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165315000-165318000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:165315000-165318800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:165316400-165317600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:165317200-165317600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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