Variant report

Variant	rs67130162
Chromosome Location	chr1:165321755-165321756
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1123821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12125353	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12126669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13374068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1948743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974080	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665237	0.83[EUR][1000 genomes]
rs6665572	0.87[EUR][1000 genomes]
rs6686310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66911579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67338345	0.95[AFR][1000 genomes]
rs73019175	1.00[ASN][1000 genomes]
rs7538365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165320400-165323200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:165321000-165321800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:165321000-165321800	Bivalent Enhancer	Fetal Heart	heart
4	chr1:165321200-165321800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
5	chr1:165321200-165322000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
6	chr1:165321200-165322200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:165321200-165322200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr1:165321200-165322200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
9	chr1:165321200-165322400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr1:165321200-165322400	Bivalent/Poised TSS	Colonic Mucosa	Colon
11	chr1:165321200-165322400	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr1:165321200-165322600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr1:165321200-165322600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
14	chr1:165321200-165324800	Bivalent Enhancer	Liver	Liver
15	chr1:165321200-165326400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr1:165321400-165321800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
17	chr1:165321400-165321800	Bivalent Enhancer	Esophagus	oesophagus
18	chr1:165321400-165321800	Bivalent Enhancer	Right Ventricle	heart
19	chr1:165321400-165322000	Bivalent Enhancer	Psoas Muscle	Psoas
20	chr1:165321400-165322200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:165321400-165322200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
22	chr1:165321400-165322200	Bivalent Enhancer	Right Atrium	heart
23	chr1:165321400-165322400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:165321400-165322600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
25	chr1:165321400-165322600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
26	chr1:165321400-165326600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
27	chr1:165321600-165321800	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
28	chr1:165321600-165321800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr1:165321600-165321800	Bivalent Enhancer	Small Intestine	intestine
30	chr1:165321600-165321800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
31	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
34	chr1:165321600-165322000	Bivalent Enhancer	Brain Substantia Nigra	brain
35	chr1:165321600-165322000	Bivalent Enhancer	Colon Smooth Muscle	Colon
36	chr1:165321600-165322000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
37	chr1:165321600-165322000	Enhancers	Gastric	stomach
38	chr1:165321600-165322000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
39	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:165321600-165322200	Bivalent Enhancer	Adipose Nuclei	Adipose
41	chr1:165321600-165322200	Bivalent Enhancer	Brain Anterior Caudate	brain
42	chr1:165321600-165322200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
43	chr1:165321600-165322200	Bivalent Enhancer	Lung	lung
44	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
45	chr1:165321600-165322200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
46	chr1:165321600-165322200	Bivalent Enhancer	Spleen	Spleen
47	chr1:165321600-165322400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:165321600-165322400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
49	chr1:165321600-165322400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
50	chr1:165321600-165322400	Bivalent Enhancer	Left Ventricle	heart

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