Variant report

Variant	rs16842100
Chromosome Location	chr1:165258646-165258647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16841720	1.00[AMR][1000 genomes]
rs16841798	1.00[AMR][1000 genomes]
rs16841929	1.00[AMR][1000 genomes]
rs16842342	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842363	1.00[AMR][1000 genomes]
rs16842378	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843003	1.00[AMR][1000 genomes]
rs57875687	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60194298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165254600-165258800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165254800-165258800	Enhancers	Liver	Liver
3	chr1:165258000-165259000	Enhancers	Fetal Muscle Trunk	muscle
4	chr1:165258200-165259200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:165258200-165260000	Weak transcription	Fetal Brain Male	brain
6	chr1:165258600-165259400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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