Variant report

Variant	rs16842443
Chromosome Location	chr4:8519884-8519885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16842337	1.00[AMR][1000 genomes]
rs16842409	1.00[AMR][1000 genomes]
rs16842423	1.00[AMR][1000 genomes]
rs16842427	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4557247	1.00[AMR][1000 genomes]
rs6816060	1.00[AMR][1000 genomes]
rs6816094	1.00[AMR][1000 genomes]
rs6846116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8514200-8520200	Enhancers	HSMMtube	muscle
2	chr4:8514600-8520000	Enhancers	Placenta	Placenta
3	chr4:8515600-8520400	Enhancers	NHDF-Ad	bronchial
4	chr4:8516400-8520200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr4:8516600-8520200	Enhancers	Fetal Muscle Leg	muscle
6	chr4:8516800-8520000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:8517400-8520000	Enhancers	NHLF	lung
8	chr4:8517800-8520200	Enhancers	Ovary	ovary
9	chr4:8518400-8520200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:8518600-8520400	Enhancers	Adipose Nuclei	Adipose
11	chr4:8518800-8520000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr4:8519000-8520200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:8519800-8523600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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