Variant report

Variant	rs6816094
Chromosome Location	chr4:8495303-8495304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8481028..8483192-chr4:8493835..8495709,2	K562	blood:
2	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12500186	0.93[AFR][1000 genomes]
rs12506703	0.89[AFR][1000 genomes]
rs12511591	0.93[AFR][1000 genomes]
rs16842337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842409	1.00[AMR][1000 genomes]
rs16842423	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16842427	1.00[AMR][1000 genomes]
rs16842443	1.00[AMR][1000 genomes]
rs4557247	1.00[AMR][1000 genomes]
rs6813671	0.93[AFR][1000 genomes]
rs6814866	0.86[AFR][1000 genomes]
rs6816060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6817579	0.89[AFR][1000 genomes]
rs6846116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73213406	0.89[AFR][1000 genomes]
rs73213409	0.89[AFR][1000 genomes]
rs73213426	0.86[AFR][1000 genomes]
rs73223242	0.86[AFR][1000 genomes]
rs73223246	0.86[AFR][1000 genomes]
rs73223250	0.89[AFR][1000 genomes]
rs73223256	0.89[AFR][1000 genomes]
rs73223257	0.89[AFR][1000 genomes]
rs73223259	0.90[AFR][1000 genomes]
rs73223263	0.90[AFR][1000 genomes]
rs73223264	0.93[AFR][1000 genomes]
rs73223266	0.93[AFR][1000 genomes]
rs73223271	0.93[AFR][1000 genomes]
rs73223275	0.93[AFR][1000 genomes]
rs73223282	0.89[AFR][1000 genomes]
rs9761200	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8478000-8500200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:8479200-8501400	Weak transcription	Liver	Liver
4	chr4:8480200-8498400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:8480600-8498200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:8480800-8497400	Weak transcription	Spleen	Spleen
8	chr4:8481400-8496800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:8481800-8497400	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
12	chr4:8484200-8497000	Weak transcription	Placenta	Placenta
13	chr4:8491000-8496600	Weak transcription	Lung	lung
14	chr4:8491000-8497600	Weak transcription	Ovary	ovary
15	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
17	chr4:8492000-8498800	Weak transcription	Fetal Stomach	stomach
18	chr4:8492000-8499600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:8493200-8496800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:8494400-8496400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:8494600-8495800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:8494600-8496000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr4:8494600-8496200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:8494600-8496400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr4:8494800-8495800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr4:8494800-8496000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr4:8494800-8496400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:8495000-8495600	Enhancers	Brain Germinal Matrix	brain
29	chr4:8495000-8496200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr4:8495000-8496600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr4:8495000-8496800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:8495200-8495600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:8495200-8495800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr4:8495200-8495800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links