Variant report

Variant	rs6817579
Chromosome Location	chr4:8521162-8521163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12500186	0.83[AFR][1000 genomes]
rs12501889	0.82[AFR][1000 genomes]
rs12506703	0.86[AFR][1000 genomes]
rs12511591	0.83[AFR][1000 genomes]
rs16842337	0.93[AFR][1000 genomes]
rs16842423	0.86[AFR][1000 genomes]
rs6813671	0.83[AFR][1000 genomes]
rs6814866	0.83[AFR][1000 genomes]
rs6816060	0.89[AFR][1000 genomes]
rs6816094	0.89[AFR][1000 genomes]
rs6846116	0.93[AFR][1000 genomes]
rs73213406	0.86[AFR][1000 genomes]
rs73213409	0.86[AFR][1000 genomes]
rs73213426	0.83[AFR][1000 genomes]
rs73223242	0.83[AFR][1000 genomes]
rs73223246	0.83[AFR][1000 genomes]
rs73223250	0.86[AFR][1000 genomes]
rs73223256	0.86[AFR][1000 genomes]
rs73223257	0.86[AFR][1000 genomes]
rs73223264	0.83[AFR][1000 genomes]
rs73223266	0.83[AFR][1000 genomes]
rs73223271	0.83[AFR][1000 genomes]
rs73223275	0.83[AFR][1000 genomes]
rs73223282	0.86[AFR][1000 genomes]
rs9761200	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8519800-8523600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:8521000-8521800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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