Variant report

Variant	rs16842895
Chromosome Location	chr2:210308543-210308544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210288165..210288679-chr2:210308477..210309152,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10210266	0.80[YRI][hapmap]
rs12614926	0.80[YRI][hapmap]
rs12986778	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12998272	1.00[CEU][hapmap]
rs12999670	1.00[CEU][hapmap]
rs16842899	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16842900	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16842904	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16842906	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17236116	0.85[YRI][hapmap]
rs2028893	0.80[YRI][hapmap]
rs2167933	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs33975733	1.00[EUR][1000 genomes]
rs34018539	1.00[EUR][1000 genomes]
rs34636750	0.94[EUR][1000 genomes]
rs34643755	1.00[EUR][1000 genomes]
rs34811576	1.00[EUR][1000 genomes]
rs34884270	1.00[EUR][1000 genomes]
rs35273017	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35321790	1.00[EUR][1000 genomes]
rs35664672	1.00[EUR][1000 genomes]
rs36013249	1.00[EUR][1000 genomes]
rs4474826	1.00[EUR][1000 genomes]
rs56086088	1.00[EUR][1000 genomes]
rs61491315	0.84[EUR][1000 genomes]
rs6736396	1.00[EUR][1000 genomes]
rs6751612	0.80[YRI][hapmap]
rs993784	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1005298	chr2:210277791-210318067	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210298200-210309200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:210300400-210312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr2:210303400-210308800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:210305000-210310400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:210306400-210308600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:210306400-210310200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:210306600-210337000	Weak transcription	Aorta	Aorta
8	chr2:210306800-210309000	Enhancers	Fetal Brain Female	brain
9	chr2:210307200-210308600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:210307400-210310400	Enhancers	NHEK	skin
11	chr2:210307400-210315400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:210307800-210309000	Weak transcription	Fetal Heart	heart
13	chr2:210308000-210309200	Enhancers	Fetal Kidney	kidney
14	chr2:210308200-210308600	Enhancers	Brain Germinal Matrix	brain
15	chr2:210308400-210309800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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