Variant report

Variant	rs35321790
Chromosome Location	chr2:210309254-210309255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12986778	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13012322	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13032935	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16842895	1.00[EUR][1000 genomes]
rs16842899	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842900	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842904	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16842906	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs33975733	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34018539	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34319559	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs34636750	0.94[EUR][1000 genomes]
rs34643755	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34811576	1.00[EUR][1000 genomes]
rs34884270	1.00[EUR][1000 genomes]
rs35216876	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35664672	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36013249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4474826	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56086088	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61491315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6736396	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9967799	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1005298	chr2:210277791-210318067	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210300400-210312400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:210305000-210310400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:210306400-210310200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr2:210306600-210337000	Weak transcription	Aorta	Aorta
5	chr2:210307400-210310400	Enhancers	NHEK	skin
6	chr2:210307400-210315400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr2:210308400-210309800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:210308600-210310200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:210308600-210315000	Weak transcription	Brain Germinal Matrix	brain
10	chr2:210308600-210324200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:210309000-210315800	Weak transcription	Fetal Brain Female	brain
12	chr2:210309200-210314800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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