Variant report

Variant	rs16843814
Chromosome Location	chr1:172054672-172054673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10465518	1.00[EUR][1000 genomes]
rs12059659	1.00[EUR][1000 genomes]
rs13353039	1.00[EUR][1000 genomes]
rs16843652	1.00[EUR][1000 genomes]
rs16843714	1.00[EUR][1000 genomes]
rs16843740	1.00[EUR][1000 genomes]
rs16843770	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16843874	1.00[EUR][1000 genomes]
rs56813784	1.00[EUR][1000 genomes]
rs56888227	1.00[EUR][1000 genomes]
rs58009573	1.00[EUR][1000 genomes]
rs58346902	1.00[EUR][1000 genomes]
rs59671783	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60165186	1.00[EUR][1000 genomes]
rs60893096	1.00[EUR][1000 genomes]
rs61510803	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7539162	1.00[EUR][1000 genomes]
rs7541042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172038200-172055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr1:172038200-172058800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:172040600-172076600	Weak transcription	Brain Angular Gyrus	brain
4	chr1:172041200-172060800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:172041400-172061600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:172041600-172061800	Weak transcription	Brain Anterior Caudate	brain
7	chr1:172041800-172061200	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:172046600-172076800	Weak transcription	Fetal Brain Female	brain
9	chr1:172048000-172083800	Weak transcription	Aorta	Aorta
10	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:172049600-172059400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:172049800-172058400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:172052400-172057400	Weak transcription	Fetal Lung	lung
14	chr1:172052400-172059000	Weak transcription	NHEK	skin
15	chr1:172052400-172060800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:172052400-172091600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:172054200-172055000	Enhancers	Fetal Kidney	kidney
18	chr1:172054600-172055000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:172054600-172057200	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links