Variant report

Variant	rs16843874
Chromosome Location	chr1:172092056-172092057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10465518	1.00[EUR][1000 genomes]
rs12059659	1.00[EUR][1000 genomes]
rs16843652	1.00[EUR][1000 genomes]
rs16843714	1.00[EUR][1000 genomes]
rs16843740	1.00[EUR][1000 genomes]
rs16843770	1.00[EUR][1000 genomes]
rs16843814	1.00[EUR][1000 genomes]
rs56813784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56888227	1.00[EUR][1000 genomes]
rs58009573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58346902	1.00[EUR][1000 genomes]
rs59671783	1.00[EUR][1000 genomes]
rs60165186	1.00[EUR][1000 genomes]
rs60893096	1.00[EUR][1000 genomes]
rs61510803	1.00[EUR][1000 genomes]
rs7539162	1.00[EUR][1000 genomes]
rs7541042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:172062400-172109200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172069200-172102000	Weak transcription	Brain Hippocampus Middle	brain
4	chr1:172077000-172096000	Weak transcription	Brain Substantia Nigra	brain
5	chr1:172077200-172110600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:172077400-172099400	Weak transcription	Fetal Brain Female	brain
7	chr1:172085600-172097000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:172085800-172113400	Weak transcription	Pancreas	Pancrea
9	chr1:172087200-172093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:172090000-172109600	Weak transcription	Brain Germinal Matrix	brain
11	chr1:172090400-172092800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:172090400-172108800	Weak transcription	Fetal Stomach	stomach
13	chr1:172090800-172102200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:172091400-172092200	Enhancers	NHEK	skin
15	chr1:172091600-172094600	Enhancers	Ovary	ovary
16	chr1:172092000-172093600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:172092000-172102800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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