Variant report

Variant	rs16843829
Chromosome Location	chr3:135975496-135975497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135967895..135971293-chr3:135973278..135977937,5	MCF-7	breast:
2	chr3:135968568..135972532-chr3:135974380..135977728,5	K562	blood:
3	chr3:135913308..135916970-chr3:135973705..135976198,3	K562	blood:

Variant related genes	Relation type
ENSG00000114054	Chromatin interaction
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16843892	0.82[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv933522	chr3:135968919-135981180	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
4	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970000-135977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:135970000-135980000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:135970200-135979000	Weak transcription	Esophagus	oesophagus
4	chr3:135970200-135980400	Weak transcription	Gastric	stomach
5	chr3:135970200-135984000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:135970200-135996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:135970400-135975600	Weak transcription	Aorta	Aorta
8	chr3:135970400-135975600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:135970400-135975600	Weak transcription	Lung	lung
10	chr3:135970400-135975800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:135970400-135979000	Weak transcription	HUVEC	blood vessel
12	chr3:135970400-135981600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr3:135970400-135995400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:135970600-135975600	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:135970600-135975800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:135970600-135975800	Weak transcription	Spleen	Spleen
17	chr3:135970600-135975800	Weak transcription	HSMMtube	muscle
18	chr3:135970600-135976800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr3:135970600-135977000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:135970600-135977000	Weak transcription	Fetal Kidney	kidney
21	chr3:135970600-135979200	Weak transcription	A549	lung
22	chr3:135970600-135979400	Weak transcription	HSMM	muscle
23	chr3:135970600-135979400	Weak transcription	NHDF-Ad	bronchial
24	chr3:135970600-135985200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:135970600-135985200	Weak transcription	HMEC	breast
26	chr3:135970600-135987600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:135970600-135998800	Weak transcription	Fetal Brain Male	brain
28	chr3:135970600-135999200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:135970600-135999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:135970800-135977200	Weak transcription	Right Ventricle	heart
32	chr3:135970800-135979200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:135970800-135981200	Weak transcription	Fetal Heart	heart
34	chr3:135970800-135986000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:135970800-135995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:135970800-135998000	Weak transcription	Hela-S3	cervix
37	chr3:135971000-135975600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:135971000-135975800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr3:135971000-135978600	Weak transcription	Small Intestine	intestine
40	chr3:135973400-135984200	Strong transcription	Fetal Stomach	stomach
41	chr3:135974000-135983400	Strong transcription	Fetal Thymus	thymus
42	chr3:135974000-135986800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:135974000-135986800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:135974000-135989400	Strong transcription	Dnd41	blood
45	chr3:135974200-135975800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:135974200-135975800	Strong transcription	Thymus	Thymus
47	chr3:135974200-135976000	Strong transcription	GM12878-XiMat	blood
48	chr3:135974200-135976200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr3:135974200-135976400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:135974200-135977200	Strong transcription	Monocytes-CD14+_RO01746	blood

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