Variant report

Variant	rs16843892
Chromosome Location	chr3:136011835-136011836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135913637..135916357-chr3:136011519..136014362,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16843694	0.86[CHB][hapmap]
rs16843829	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs2305265	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:135976200-136012400	Weak transcription	NHLF	lung
3	chr3:135976200-136016400	Weak transcription	Colonic Mucosa	Colon
4	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:135981200-136052000	Weak transcription	NH-A	brain
6	chr3:135981600-136020400	Weak transcription	HUVEC	blood vessel
7	chr3:135996800-136016000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:135997000-136012000	Weak transcription	Spleen	Spleen
9	chr3:135997400-136015200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:135998000-136040200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr3:135999800-136013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:135999800-136013000	Weak transcription	Small Intestine	intestine
13	chr3:135999800-136016200	Weak transcription	Esophagus	oesophagus
14	chr3:135999800-136016800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:135999800-136019000	Weak transcription	NHEK	skin
16	chr3:135999800-136038200	Weak transcription	Fetal Brain Male	brain
17	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
18	chr3:136000000-136016600	Weak transcription	Thymus	Thymus
19	chr3:136000000-136024600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr3:136000200-136012200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr3:136000200-136038200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr3:136001200-136016400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:136001200-136019200	Weak transcription	Colon Smooth Muscle	Colon
24	chr3:136002000-136017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:136002200-136012400	Weak transcription	Brain Angular Gyrus	brain
26	chr3:136002200-136014800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:136002200-136015600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:136002400-136012000	Weak transcription	Pancreas	Pancrea
29	chr3:136002800-136012600	Weak transcription	GM12878-XiMat	blood
30	chr3:136003000-136012200	Weak transcription	Aorta	Aorta
31	chr3:136003000-136016400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:136004200-136016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:136004200-136016200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr3:136004400-136012600	Weak transcription	A549	lung
35	chr3:136004400-136014000	Weak transcription	K562	blood
36	chr3:136004400-136015600	Weak transcription	Fetal Lung	lung
37	chr3:136004600-136012200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:136004600-136012200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:136004600-136012200	Weak transcription	Brain Hippocampus Middle	brain
40	chr3:136004600-136012200	Weak transcription	HSMMtube	muscle
41	chr3:136004600-136012600	Weak transcription	Fetal Thymus	thymus
42	chr3:136004600-136012600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr3:136004600-136014000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:136004600-136021400	Weak transcription	HMEC	breast
45	chr3:136004600-136022000	Weak transcription	NHDF-Ad	bronchial
46	chr3:136004800-136012600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:136005000-136012400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr3:136005000-136012600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr3:136005000-136016000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr3:136005200-136012200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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