Variant report

Variant	rs16843915
Chromosome Location	chr1:172118702-172118703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172114639..172117543-chr1:172117607..172120253,2	K562	blood:
2	chr1:172109737..172112011-chr1:172117848..172120682,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10489299	0.92[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12562173	1.00[EUR][1000 genomes]
rs12562275	1.00[EUR][1000 genomes]
rs12562403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12564349	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12568723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12568908	1.00[EUR][1000 genomes]
rs12569096	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12569236	1.00[EUR][1000 genomes]
rs12569310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843801	1.00[EUR][1000 genomes]
rs16843816	1.00[EUR][1000 genomes]
rs16843819	0.82[MEX][hapmap];1.00[EUR][1000 genomes]
rs16843820	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843827	1.00[EUR][1000 genomes]
rs16843831	1.00[EUR][1000 genomes]
rs16843837	0.82[MEX][hapmap];1.00[EUR][1000 genomes]
rs16843841	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843842	1.00[EUR][1000 genomes]
rs16843935	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3924561	1.00[EUR][1000 genomes]
rs57417995	0.99[ASN][1000 genomes]
rs59665490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60077625	0.80[ASN][1000 genomes]
rs60255562	0.93[ASN][1000 genomes]
rs73039343	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172114400-172137000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172114800-172123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr1:172115000-172119600	Weak transcription	Ovary	ovary
4	chr1:172115000-172119800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:172115000-172123400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:172115000-172123600	Weak transcription	Adipose Nuclei	Adipose
7	chr1:172115000-172133800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr1:172115200-172118800	Enhancers	NHDF-Ad	bronchial
9	chr1:172115200-172119200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr1:172115200-172119400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:172115400-172119200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172115600-172132600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:172116000-172123400	Weak transcription	NH-A	brain
14	chr1:172116400-172123200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:172116800-172123400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:172117200-172119200	Enhancers	Fetal Kidney	kidney
17	chr1:172117600-172119000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:172117600-172119400	Enhancers	Fetal Lung	lung
19	chr1:172117600-172120000	Enhancers	Fetal Stomach	stomach
20	chr1:172117800-172118800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:172117800-172119200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:172117800-172122200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:172118000-172118800	Enhancers	Colon Smooth Muscle	Colon
24	chr1:172118000-172119000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:172118000-172119200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr1:172118000-172119600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr1:172118000-172122200	Weak transcription	HMEC	breast
28	chr1:172118200-172122400	Weak transcription	NHLF	lung
29	chr1:172118200-172123200	Weak transcription	HUVEC	blood vessel
30	chr1:172118400-172119200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:172118600-172118800	Enhancers	NHEK	skin
32	chr1:172118600-172119000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:172118600-172119000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr1:172118600-172119000	Enhancers	Osteobl	bone

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