Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:172075308..172077660-chr1:172081191..172083518,2	MCF-7	breast:
2	chr1:172076161..172078704-chr1:172081892..172083609,2	MCF-7	breast:
3	chr1:172081759..172083633-chr1:172085857..172087985,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10218642	0.87[ASN][1000 genomes]
rs12561987	0.80[ASN][1000 genomes]
rs12562173	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12562275	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12562403	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12564349	1.00[EUR][1000 genomes]
rs12568723	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12568908	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12569096	1.00[EUR][1000 genomes]
rs12569236	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12569310	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843801	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843816	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843819	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16843820	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843827	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843831	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843837	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843841	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843842	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16843915	1.00[EUR][1000 genomes]
rs16843935	1.00[EUR][1000 genomes]
rs34737151	0.83[ASN][1000 genomes]
rs3924561	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4264026	0.83[ASN][1000 genomes]
rs4916420	0.89[ASN][1000 genomes]
rs59665490	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172048000-172083800	Weak transcription	Aorta	Aorta
2	chr1:172049400-172110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:172052400-172091600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172062400-172109200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr1:172069200-172102000	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:172077000-172096000	Weak transcription	Brain Substantia Nigra	brain
7	chr1:172077200-172110600	Weak transcription	Brain Angular Gyrus	brain
8	chr1:172077400-172099400	Weak transcription	Fetal Brain Female	brain
9	chr1:172079000-172090400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:172079400-172083600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:172079400-172089800	Weak transcription	Fetal Stomach	stomach
12	chr1:172081400-172082000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:172081400-172082000	Enhancers	NHDF-Ad	bronchial
14	chr1:172081400-172082200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:172081600-172082000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:172081600-172082000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:172081600-172083400	Enhancers	HUVEC	blood vessel

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