Variant report

Variant	rs4916420
Chromosome Location	chr1:172045122-172045123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10218614	0.82[ASN][1000 genomes]
rs10218642	0.97[ASN][1000 genomes]
rs12561987	0.91[ASN][1000 genomes]
rs12562173	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12562275	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12562403	0.92[ASN][1000 genomes]
rs12568081	0.82[ASN][1000 genomes]
rs12568723	1.00[ASN][1000 genomes]
rs12568908	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12569236	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12569310	0.92[ASN][1000 genomes]
rs16843769	0.82[ASN][1000 genomes]
rs16843771	0.82[ASN][1000 genomes]
rs16843772	0.82[ASN][1000 genomes]
rs16843775	0.82[ASN][1000 genomes]
rs16843777	0.82[ASN][1000 genomes]
rs16843795	0.82[ASN][1000 genomes]
rs16843801	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16843816	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16843819	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16843820	0.92[ASN][1000 genomes]
rs16843827	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16843831	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16843837	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16843841	0.92[ASN][1000 genomes]
rs16843842	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34737151	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3924561	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4264026	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4916417	0.82[ASN][1000 genomes]
rs4916419	0.82[ASN][1000 genomes]
rs73039343	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172010600-172051400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:172038200-172055400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:172038200-172058800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:172040600-172076600	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172041000-172054000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:172041200-172060800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:172041400-172052000	Weak transcription	HMEC	breast
8	chr1:172041400-172061600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:172041600-172061800	Weak transcription	Brain Anterior Caudate	brain
10	chr1:172041800-172052000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:172041800-172061200	Weak transcription	Brain Hippocampus Middle	brain

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