Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10496843	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11884532	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11899317	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11904593	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843984	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs16844034	0.83[AMR][1000 genomes]
rs16844052	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844065	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844069	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844072	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844074	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844075	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844079	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844083	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844085	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844087	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844089	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949452	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs34813383	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6757691	1.00[CEU][hapmap]
rs73961413	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754266	chr2:141023643-141270786	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv2756334	chr2:141166521-141285622	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv875187	chr2:141170340-141237995	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
4	nsv875188	chr2:141207018-141253408	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv875189	chr2:141207018-141258419	Active TSS Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	nsv875190	chr2:141218933-141258419	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv875191	chr2:141218933-141268030	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
8	nsv459518	chr2:141218933-141282923	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv583191	chr2:141218933-141282923	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv875192	chr2:141224542-141268030	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141226200-141231800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:141230600-141232200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:141231000-141231800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr2:141231000-141232200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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