Variant report
| Variant | rs16844089 |
|---|---|
| Chromosome Location | chr2:141234337-141234338 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10496843 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11884532 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11899317 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11904593 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16843984 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes] |
| rs16844034 | 0.83[AMR][1000 genomes] |
| rs16844052 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844063 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844065 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844069 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844072 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844074 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844075 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844079 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844083 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844085 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16844087 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1949452 | 1.00[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs34813383 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6757691 | 1.00[CEU][hapmap] |
| rs73961413 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754266 | chr2:141023643-141270786 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2756334 | chr2:141166521-141285622 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 3 | nsv875187 | chr2:141170340-141237995 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| 4 | nsv875188 | chr2:141207018-141253408 | Enhancers Weak transcription Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 5 | nsv875189 | chr2:141207018-141258419 | Active TSS Flanking Active TSS Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 6 | nsv875190 | chr2:141218933-141258419 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | n/a |
| 7 | nsv875191 | chr2:141218933-141268030 | Weak transcription Flanking Active TSS Enhancers Active TSS | n/a | n/a | inside rSNPs | n/a |
| 8 | nsv459518 | chr2:141218933-141282923 | Enhancers Active TSS Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 9 | nsv583191 | chr2:141218933-141282923 | Enhancers Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| 10 | nsv875192 | chr2:141224542-141268030 | Enhancers Weak transcription Flanking Active TSS Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:141232400-141234400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
