Variant report

Variant	rs16844373
Chromosome Location	chr2:141398862-141398863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10496850	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10496851	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16844384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16844404	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16844405	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16844406	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16844409	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17202019	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs542955	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59641835	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60901381	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs969109	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583193	chr2:141365171-141415043	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141397600-141401200	Weak transcription	Fetal Lung	lung
2	chr2:141398400-141399200	Enhancers	GM12878-XiMat	blood
3	chr2:141398400-141401000	Enhancers	A549	lung
4	chr2:141398600-141399200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:141398600-141401400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:141398800-141399200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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