Variant report

Variant	rs16844409
Chromosome Location	chr2:141417289-141417290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10496850	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10496851	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11899127	1.00[YRI][hapmap]
rs16844373	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16844384	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16844404	0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16844405	1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16844406	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16844436	0.83[AMR][1000 genomes]
rs16844477	1.00[YRI][hapmap]
rs17202019	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs542955	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59641835	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60901381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6728469	1.00[YRI][hapmap]
rs6728811	1.00[YRI][hapmap]
rs969109	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875194	chr2:141391918-141504719	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv875195	chr2:141407101-141542081	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv583194	chr2:141409166-141471725	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv875196	chr2:141409166-141471725	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv875197	chr2:141409166-141478468	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv875198	chr2:141409166-141571329	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv875199	chr2:141409166-141600366	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv583195	chr2:141415043-141466384	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141413000-141417400	Enhancers	Hela-S3	cervix
2	chr2:141414200-141418200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr2:141416800-141417400	Flanking Active TSS	A549	lung
4	chr2:141417000-141420800	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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