Variant report

Variant	rs16844619
Chromosome Location	chr2:211422333-211422334
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10188695	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10189047	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10197334	0.83[ASN][1000 genomes]
rs10205168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10211666	0.81[ASN][1000 genomes]
rs10490319	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13016272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1858193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2287602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2287604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2887913	0.80[YRI][hapmap]
rs4142155	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6749597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211412000-211422400	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:211416800-211425800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr2:211418200-211424400	Genic enhancers	Fetal Intestine Large	intestine
4	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:211419600-211423800	Enhancers	Fetal Intestine Small	intestine
6	chr2:211421000-211423000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:211421000-211423600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr2:211421000-211423600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:211421200-211423600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:211421200-211424600	Active TSS	Hela-S3	cervix
11	chr2:211421200-211425400	Active TSS	Liver	Liver
12	chr2:211421400-211423400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:211421600-211422800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:211421600-211423200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:211421600-211423400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr2:211421600-211423800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:211421800-211423600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr2:211422000-211422600	Enhancers	Fetal Kidney	kidney
19	chr2:211422000-211423000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr2:211422000-211423000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:211422000-211424600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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