Variant report

Variant	rs4142155
Chromosome Location	chr2:211420976-211420977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10188695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10189047	0.93[ASN][1000 genomes]
rs10197334	0.82[ASN][1000 genomes]
rs10205168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10490319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1160334	1.00[AFR][1000 genomes]
rs13016272	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16844382	1.00[AFR][1000 genomes]
rs16844619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1858193	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2287602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2287604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6749597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9789405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211406200-211421000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:211412000-211422400	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:211413200-211421000	Enhancers	Hela-S3	cervix
4	chr2:211414000-211421200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr2:211416800-211425800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:211418200-211424400	Genic enhancers	Fetal Intestine Large	intestine
7	chr2:211418600-211443200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:211419600-211423800	Enhancers	Fetal Intestine Small	intestine
9	chr2:211419800-211421000	Enhancers	Liver	Liver
10	chr2:211420400-211422000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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