Variant report

Variant	rs16844828
Chromosome Location	chr1:225577250-225577251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:225577090-225577450	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DNAH14	TF binding region

rs_ID	r²[population]
rs6679318	1.00[CHD][hapmap]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225564400-225577600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:225567200-225577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:225567200-225585000	Weak transcription	NHEK	skin
6	chr1:225568200-225583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
10	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
11	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
12	chr1:225571400-225583400	Weak transcription	Aorta	Aorta
13	chr1:225571400-225585000	Weak transcription	Gastric	stomach
14	chr1:225574600-225577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:225575400-225577800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:225576000-225583600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr1:225576200-225577400	Weak transcription	Thymus	Thymus
20	chr1:225576200-225577800	Weak transcription	Fetal Brain Female	brain
21	chr1:225576200-225583800	Weak transcription	Primary B cells from cord blood	blood
22	chr1:225576200-225585000	Weak transcription	Fetal Stomach	stomach
23	chr1:225576200-225585200	Weak transcription	Osteobl	bone
24	chr1:225576200-225594400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr1:225576400-225583400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:225576400-225583600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:225576400-225585000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:225576400-225586000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr1:225576400-225586000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:225576600-225582200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr1:225576600-225588600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr1:225576800-225583800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr1:225576800-225585000	Weak transcription	Lung	lung
34	chr1:225577200-225578200	Enhancers	Fetal Thymus	thymus

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