Variant report

Variant	rs6679318
Chromosome Location	chr1:225575905-225575906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225574120..225577157-chr1:225578025..225581400,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12083979	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12085130	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12087159	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs12089582	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs1537877	1.00[JPT][hapmap]
rs16844828	1.00[CHD][hapmap]
rs16844841	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs16844846	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs16844847	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844850	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844853	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17558869	1.00[JPT][hapmap]
rs41304014	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61738690	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225564400-225577600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:225567000-225583400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:225567000-225585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:225567200-225577600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:225567200-225585000	Weak transcription	NHEK	skin
6	chr1:225568200-225583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:225568200-225585000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:225568200-225595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:225569400-225585000	Weak transcription	Pancreas	Pancrea
10	chr1:225570400-225587600	Weak transcription	Spleen	Spleen
11	chr1:225570800-225600000	Weak transcription	HSMMtube	muscle
12	chr1:225571400-225583400	Weak transcription	Aorta	Aorta
13	chr1:225571400-225585000	Weak transcription	Gastric	stomach
14	chr1:225574600-225577800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:225574800-225584000	Weak transcription	Primary T cells from cord blood	blood
16	chr1:225575400-225577800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:225575600-225588200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:225575800-225576000	Enhancers	Primary hematopoietic stem cells	blood
19	chr1:225575800-225576200	Enhancers	Osteobl	bone
20	chr1:225575800-225576400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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