Variant report

Variant	rs16844899
Chromosome Location	chr1:225622378-225622379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16844879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6684200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225616600-225622800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:225617400-225626600	Weak transcription	Dnd41	blood
3	chr1:225618400-225624600	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:225619600-225629000	Weak transcription	Spleen	Spleen
5	chr1:225621200-225622400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:225621200-225622600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:225621200-225623000	Weak transcription	K562	blood
8	chr1:225621200-225625000	Enhancers	Thymus	Thymus
9	chr1:225621200-225626000	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:225621400-225623000	Enhancers	Primary hematopoietic stem cells	blood
11	chr1:225621400-225623400	Enhancers	Primary B cells from cord blood	blood
12	chr1:225621400-225624600	Enhancers	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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