Variant report

Variant	rs6684200
Chromosome Location	chr1:225617452-225617453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225616757..225618444-chr1:225653517..225655559,2	K562	blood:
2	chr1:225607872..225610815-chr1:225614150..225617627,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143815	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16844879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6673410	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832714	chr1:225592333-225805396	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1004851	chr1:225614140-225684184	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225616600-225618800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:225616600-225618800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:225616600-225622800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:225616800-225618400	Enhancers	Colon Smooth Muscle	Colon
5	chr1:225617000-225617600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
6	chr1:225617000-225617600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:225617000-225618200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:225617000-225618400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:225617000-225618400	Enhancers	HUVEC	blood vessel
10	chr1:225617200-225618200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:225617200-225618200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:225617200-225618200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr1:225617200-225618200	Enhancers	Primary hematopoietic stem cells	blood
14	chr1:225617200-225618400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:225617200-225618400	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr1:225617200-225619000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:225617200-225621200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr1:225617200-225621200	Weak transcription	Thymus	Thymus
19	chr1:225617400-225618400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr1:225617400-225626600	Weak transcription	Dnd41	blood

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