Variant report

Variant	rs16844987
Chromosome Location	chr3:102078296-102078297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1399767	1.00[AMR][1000 genomes]
rs1399768	1.00[AMR][1000 genomes]
rs16844991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845005	1.00[AMR][1000 genomes]
rs16845010	1.00[AMR][1000 genomes]
rs16845028	1.00[AMR][1000 genomes]
rs16845031	1.00[AMR][1000 genomes]
rs16845051	1.00[AMR][1000 genomes]
rs16845092	1.00[AMR][1000 genomes]
rs16845152	1.00[AMR][1000 genomes]
rs16845154	1.00[AMR][1000 genomes]
rs16845157	1.00[AMR][1000 genomes]
rs57555073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv877227	chr3:102067254-102184308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102072600-102080000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:102075200-102079000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:102075600-102096600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:102075800-102078800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:102076000-102079400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:102076400-102078600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:102076400-102078800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:102077200-102078400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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