Variant report

Variant	rs16845152
Chromosome Location	chr3:102289597-102289598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12107279	1.00[AMR][1000 genomes]
rs1399767	1.00[AMR][1000 genomes]
rs1399768	1.00[AMR][1000 genomes]
rs16844987	1.00[AMR][1000 genomes]
rs16844991	1.00[AMR][1000 genomes]
rs16845005	1.00[AMR][1000 genomes]
rs16845010	1.00[AMR][1000 genomes]
rs16845028	1.00[AMR][1000 genomes]
rs16845031	1.00[AMR][1000 genomes]
rs16845051	1.00[AMR][1000 genomes]
rs16845092	1.00[AMR][1000 genomes]
rs16845154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845157	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102288200-102291400	Enhancers	Liver	Liver
2	chr3:102288400-102291200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:102288800-102289600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:102288800-102290400	Weak transcription	Pancreas	Pancrea
5	chr3:102289400-102289800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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