The 2.0 version of rSNPBase

Variant report

Variant rs16845119
Chromosome Location chr1:172886581-172886582
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172882800-172889400 Enhancers HUVEC blood vessel
2 chr1:172883000-172889600 Enhancers NHLF lung
3 chr1:172883400-172888200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr1:172883400-172888400 Enhancers Breast Myoepithelial Primary Cells Breast
5 chr1:172883400-172889200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:172883400-172889400 Enhancers NHDF-Ad bronchial
7 chr1:172883600-172886600 Enhancers A549 lung
8 chr1:172883600-172886800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr1:172883600-172887000 Enhancers Muscle Satellite Cultured Cells --
10 chr1:172883600-172888200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr1:172883600-172888200 Enhancers Osteobl bone
12 chr1:172883600-172889400 Enhancers HMEC breast
13 chr1:172883600-172890400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:172883800-172890600 Enhancers HSMMtube muscle
15 chr1:172884000-172889600 Enhancers HSMM muscle
16 chr1:172884200-172887000 Enhancers Placenta Amnion Placenta Amnion
17 chr1:172884400-172887000 Enhancers NHEK skin
18 chr1:172884400-172888400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:172884800-172887000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr1:172885000-172886600 Weak transcription Colon Smooth Muscle Colon
21 chr1:172885200-172889800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr1:172885400-172886600 Weak transcription Stomach Smooth Muscle stomach
23 chr1:172885400-172888200 Enhancers NH-A brain
24 chr1:172885600-172887200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:172885800-172886600 Enhancers Aorta Aorta
26 chr1:172886400-172887800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:172886400-172888200 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015