Variant report

Variant	rs16846269
Chromosome Location	chr3:141407866-141407867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72990352	1.00[AMR][1000 genomes]
rs73872352	1.00[AMR][1000 genomes]
rs7619864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv34073	chr3:141395818-141448774	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141400600-141415000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:141401800-141408400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:141402200-141420800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:141406200-141408400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:141406200-141408600	Weak transcription	NHLF	lung
6	chr3:141406200-141409200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:141406200-141409400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:141406200-141409400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:141406200-141414200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:141406400-141409000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:141406400-141409200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:141407600-141411200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:141407800-141408400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr3:141407800-141408600	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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