Variant report

Variant	rs72990352
Chromosome Location	chr3:141333318-141333319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141331251..141333372-chr3:141334736..141336860,2	K562	blood:
2	chr3:141331872..141333537-chr3:141335143..141336860,2	K562	blood:
3	chr3:141204106..141207979-chr3:141333280..141335871,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RASA2-1	chr3:141331749-141334185	NONHSAT092438

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16846269	1.00[AMR][1000 genomes]
rs58556651	0.86[AFR][1000 genomes]
rs60984011	0.82[AFR][1000 genomes]
rs72990334	0.88[AFR][1000 genomes]
rs72990349	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:141313200-141344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:141320400-141333600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr3:141320400-141337200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:141321800-141342600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:141324000-141333800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr3:141324200-141333600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr3:141324200-141336000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr3:141324800-141334000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:141325000-141338000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:141325600-141333600	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:141325600-141335000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:141325800-141333600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:141326600-141334000	Strong transcription	Dnd41	blood
16	chr3:141326600-141334200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:141326600-141335400	Strong transcription	HUVEC	blood vessel
18	chr3:141326800-141334000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:141326800-141335600	Strong transcription	Primary B cells from cord blood	blood
20	chr3:141327000-141333400	Strong transcription	Placenta	Placenta
21	chr3:141327000-141333600	Strong transcription	Primary T cells from cord blood	blood
22	chr3:141327800-141333400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr3:141328800-141336000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:141329200-141333400	Strong transcription	Primary hematopoietic stem cells	blood
25	chr3:141330000-141338800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr3:141330200-141333600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:141330200-141333600	Weak transcription	Fetal Heart	heart
28	chr3:141330200-141336600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:141330200-141338200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:141330400-141333800	Weak transcription	Right Ventricle	heart
31	chr3:141330400-141334400	Weak transcription	Fetal Muscle Leg	muscle
32	chr3:141330400-141334600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr3:141330400-141334600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr3:141330400-141334800	Weak transcription	NH-A	brain
35	chr3:141330400-141335600	Weak transcription	Hela-S3	cervix
36	chr3:141330400-141336400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:141330400-141336400	Weak transcription	NHEK	skin
38	chr3:141330400-141337000	Weak transcription	Lung	lung
39	chr3:141330400-141337400	Weak transcription	HSMMtube	muscle
40	chr3:141330400-141337800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:141330400-141338000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:141330400-141342000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr3:141330400-141342000	Weak transcription	Pancreas	Pancrea
44	chr3:141330400-141343200	Weak transcription	Brain Angular Gyrus	brain
45	chr3:141330400-141344000	Weak transcription	HMEC	breast
46	chr3:141330400-141344600	Weak transcription	NHLF	lung
47	chr3:141330600-141333800	Weak transcription	Esophagus	oesophagus
48	chr3:141330600-141334600	Weak transcription	Fetal Stomach	stomach
49	chr3:141330600-141335200	Weak transcription	Spleen	Spleen
50	chr3:141330600-141336400	Weak transcription	Fetal Intestine Small	intestine

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