Variant report

Variant	rs58556651
Chromosome Location	chr3:141255912-141255913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141247002..141250930-chr3:141252539..141256431,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16851513	1.00[AMR][1000 genomes]
rs16851562	1.00[AMR][1000 genomes]
rs16851589	1.00[AMR][1000 genomes]
rs16851594	1.00[AMR][1000 genomes]
rs3732867	1.00[AMR][1000 genomes]
rs3732868	1.00[AMR][1000 genomes]
rs60984011	0.87[AFR][1000 genomes]
rs61732448	1.00[AMR][1000 genomes]
rs72990334	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72990340	0.91[AFR][1000 genomes]
rs72990349	0.87[AFR][1000 genomes]
rs72990352	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006237	chr3:141227525-141300722	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1014365	chr3:141235379-141282615	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141217800-141258400	Weak transcription	Psoas Muscle	Psoas
2	chr3:141229400-141267400	Weak transcription	Fetal Heart	heart
3	chr3:141230000-141259800	Weak transcription	Small Intestine	intestine
4	chr3:141231600-141263600	Weak transcription	Fetal Brain Male	brain
5	chr3:141236200-141281600	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:141236400-141276000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:141236400-141301000	Weak transcription	Brain Substantia Nigra	brain
8	chr3:141236400-141306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:141236600-141263200	Weak transcription	Brain Germinal Matrix	brain
10	chr3:141236600-141275800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr3:141236600-141297000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr3:141236600-141299400	Weak transcription	Gastric	stomach
13	chr3:141237000-141265400	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:141237000-141299400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:141241800-141263600	Weak transcription	Fetal Brain Female	brain
16	chr3:141242200-141263600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:141242200-141274800	Weak transcription	Lung	lung
18	chr3:141243400-141299400	Weak transcription	Spleen	Spleen
19	chr3:141243600-141263600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:141246000-141278400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:141249200-141257200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:141249200-141258200	Weak transcription	Brain Anterior Caudate	brain
23	chr3:141249200-141274600	Weak transcription	Liver	Liver
24	chr3:141249800-141260600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:141249800-141260600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:141250600-141257000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:141250800-141261000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr3:141251200-141257800	Weak transcription	HMEC	breast
29	chr3:141251400-141257000	Strong transcription	Primary T cells fromperipheralblood	blood
30	chr3:141251400-141257400	Weak transcription	Hela-S3	cervix
31	chr3:141252200-141256400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:141252200-141262200	Weak transcription	HSMMtube	muscle
33	chr3:141252800-141256800	Strong transcription	HSMM	muscle
34	chr3:141253000-141256400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:141253000-141257400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:141253800-141256800	Strong transcription	Primary T cells from cord blood	blood
37	chr3:141254000-141256000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:141254200-141256400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr3:141254400-141256200	Strong transcription	NHDF-Ad	bronchial
40	chr3:141254400-141256600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:141254600-141257200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:141254600-141261000	Weak transcription	Fetal Kidney	kidney
43	chr3:141254600-141270800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr3:141254600-141294400	Weak transcription	Esophagus	oesophagus
45	chr3:141254800-141256000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr3:141254800-141256000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:141254800-141256000	Weak transcription	A549	lung
48	chr3:141254800-141256000	Weak transcription	HUVEC	blood vessel
49	chr3:141254800-141256200	Strong transcription	Primary B cells from cord blood	blood
50	chr3:141254800-141256400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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