Variant report

Variant	rs16851594
Chromosome Location	chr3:141372520-141372521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16851513	1.00[AMR][1000 genomes]
rs16851562	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851589	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3732867	1.00[AMR][1000 genomes]
rs3732868	1.00[AMR][1000 genomes]
rs58556651	1.00[AMR][1000 genomes]
rs61732448	1.00[AMR][1000 genomes]
rs72990334	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv524429	chr3:141372391-141377330	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141364400-141377600	Weak transcription	Aorta	Aorta
2	chr3:141369600-141373400	Enhancers	Colon Smooth Muscle	Colon
3	chr3:141370600-141373000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:141370800-141373400	Enhancers	Rectal Smooth Muscle	rectum
5	chr3:141371600-141372600	Weak transcription	K562	blood
6	chr3:141372000-141376000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:141372200-141372800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:141372200-141373000	Enhancers	Fetal Stomach	stomach
9	chr3:141372400-141372600	Enhancers	Fetal Lung	lung
10	chr3:141372400-141373000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links