Variant report

Variant	rs61732448
Chromosome Location	chr3:141163975-141163976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:141161815-141164620	GM12878	blood:	n/a	n/a
2	CEBPB	chr3:141163545-141163977	IMR90	lung:	n/a	n/a
3	POLR2A	chr3:141163702-141164793	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:141087300..141088860-chr3:141163731..141166703,2	K562	blood:
2	chr3:141160175..141161761-chr3:141162078..141164256,2	MCF-7	breast:
3	chr3:141153602..141155121-chr3:141161905..141164739,2	K562	blood:
4	chr3:141156646..141158952-chr3:141162167..141164221,2	K562	blood:

Variant related genes	Relation type
ZBTB38	TF binding region
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs16851513	1.00[AMR][1000 genomes]
rs16851562	1.00[AMR][1000 genomes]
rs16851589	1.00[AMR][1000 genomes]
rs16851594	1.00[AMR][1000 genomes]
rs2291601	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34462603	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3732867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3755767	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3773839	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55951689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58556651	1.00[AMR][1000 genomes]
rs58970344	1.00[AMR][1000 genomes]
rs6795622	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6800247	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72990334	1.00[AMR][1000 genomes]
rs73869612	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73869618	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73872729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624021	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637336	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637458	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637802	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9682548	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141148800-141164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:141149400-141164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:141153200-141164000	Weak transcription	Psoas Muscle	Psoas
5	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
6	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
7	chr3:141159600-141165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:141159800-141164600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:141160400-141165200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:141160400-141166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr3:141160400-141166600	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:141160400-141166800	Strong transcription	A549	lung
13	chr3:141160400-141167400	Strong transcription	HSMM	muscle
14	chr3:141160400-141169600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:141160600-141166600	Strong transcription	HepG2	liver
17	chr3:141160600-141166800	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr3:141160800-141166600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:141161000-141164200	Strong transcription	Brain Cingulate Gyrus	brain
20	chr3:141161000-141165000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:141161000-141165200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:141161000-141165800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:141161000-141166800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr3:141161000-141166800	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr3:141161200-141164200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:141161200-141164200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:141161200-141164400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr3:141161200-141164600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:141161200-141164600	Genic enhancers	Osteobl	bone
30	chr3:141161200-141164800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr3:141161200-141164800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr3:141161200-141165000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:141161200-141165800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:141161200-141166000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:141161200-141166400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:141161200-141166600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr3:141161200-141166600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:141161200-141166600	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr3:141161200-141166600	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr3:141161200-141166800	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr3:141161200-141166800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr3:141161200-141166800	Strong transcription	Adipose Nuclei	Adipose
43	chr3:141161200-141166800	Strong transcription	Liver	Liver
44	chr3:141161200-141166800	Strong transcription	Fetal Brain Female	brain
45	chr3:141161200-141166800	Strong transcription	GM12878-XiMat	blood
46	chr3:141161200-141167400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr3:141161200-141169000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr3:141161400-141164200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:141161400-141164200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:141161400-141164200	Strong transcription	Brain Hippocampus Middle	brain

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