Variant report

Variant	rs3755767
Chromosome Location	chr3:141326759-141326760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141326204..141327732-chr3:141330355..141332804,2	K562	blood:
2	chr3:141325633..141327918-chr3:141334802..141336687,2	MCF-7	breast:
3	chr3:141318833..141320524-chr3:141324671..141327437,2	K562	blood:
4	chr3:141326316..141328751-chr3:141631942..141633782,2	K562	blood:

Variant related genes	Relation type
ENSG00000249986	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2291601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34462603	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732867	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3732868	0.89[ASN][1000 genomes]
rs3773839	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55951689	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61732448	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6795622	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6800247	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73869612	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73869618	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73872729	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7624021	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637336	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637458	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637802	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7643015	1.00[AMR][1000 genomes]
rs9682548	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141265200-141336200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141276400-141329400	Weak transcription	Small Intestine	intestine
3	chr3:141277200-141341400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:141281800-141329400	Weak transcription	Fetal Brain Male	brain
5	chr3:141298000-141328400	Weak transcription	Hela-S3	cervix
6	chr3:141298600-141326800	Weak transcription	Fetal Heart	heart
7	chr3:141300200-141328800	Weak transcription	K562	blood
8	chr3:141301600-141327000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:141302000-141326800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:141305200-141329000	Weak transcription	NHLF	lung
11	chr3:141306200-141328800	Weak transcription	Right Ventricle	heart
12	chr3:141307400-141328400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:141310400-141327000	Weak transcription	Fetal Kidney	kidney
14	chr3:141310400-141327200	Weak transcription	HepG2	liver
15	chr3:141313200-141344000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:141313400-141328800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr3:141315000-141328800	Weak transcription	Colonic Mucosa	Colon
18	chr3:141315200-141328800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:141315800-141326800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:141315800-141328600	Weak transcription	Brain Anterior Caudate	brain
21	chr3:141316200-141326800	Weak transcription	HMEC	breast
22	chr3:141316200-141327400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:141316400-141327000	Weak transcription	Liver	Liver
24	chr3:141319400-141329400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr3:141319600-141326800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:141319600-141327200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:141319600-141327400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:141319600-141327400	Weak transcription	Lung	lung
29	chr3:141319600-141329000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:141319600-141329600	Weak transcription	HSMMtube	muscle
31	chr3:141319800-141327000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:141319800-141327000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr3:141320000-141326800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:141320000-141326800	Weak transcription	NH-A	brain
35	chr3:141320200-141326800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:141320200-141328800	Weak transcription	Spleen	Spleen
37	chr3:141320200-141329000	Weak transcription	Pancreas	Pancrea
38	chr3:141320200-141329400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:141320400-141326800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:141320400-141327000	Weak transcription	Placenta	Placenta
41	chr3:141320400-141327400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:141320400-141331000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr3:141320400-141333600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr3:141320400-141337200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:141320600-141327000	Weak transcription	Adipose Nuclei	Adipose
46	chr3:141320600-141327400	Weak transcription	Osteobl	bone
47	chr3:141321200-141326800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:141321400-141326800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr3:141321400-141326800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:141321400-141326800	Weak transcription	Duodenum Mucosa	Duodenum

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