Variant report

Variant	rs73872729
Chromosome Location	chr3:141159489-141159490
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141158978..141161991-chr3:141166297..141169047,4	K562	blood:
2	chr3:141159186..141161799-chr3:141162940..141165870,2	MCF-7	breast:
3	chr3:141159442..141161991-chr3:141166297..141167819,2	K562	blood:
4	chr3:141028766..141032567-chr3:141157435..141160159,4	K562	blood:
5	chr3:141153683..141156573-chr3:141158682..141161645,2	K562	blood:
6	chr3:141112658..141115494-chr3:141157644..141160084,2	K562	blood:
7	chr3:141157834..141161364-chr3:141205126..141207553,3	K562	blood:
8	chr3:141158936..141162571-chr3:141173016..141176156,4	MCF-7	breast:
9	chr3:141157834..141161921-chr3:141205126..141207972,3	K562	blood:
10	chr3:141028495..141032567-chr3:141157435..141162053,7	K562	blood:
11	chr3:141087440..141090679-chr3:141157733..141160398,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2291601	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34462603	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3732867	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732868	1.00[ASN][1000 genomes]
rs3755767	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3773839	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55951689	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61732448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795622	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6800247	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73869612	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73869618	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7624021	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637336	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637458	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7637802	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9682548	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
2	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
3	chr3:141134000-141161600	Weak transcription	Fetal Brain Male	brain
4	chr3:141134200-141161600	Weak transcription	Primary T cells from cord blood	blood
5	chr3:141135600-141160200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:141145000-141160000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:141145400-141161200	Weak transcription	Fetal Brain Female	brain
8	chr3:141145400-141161800	Weak transcription	Esophagus	oesophagus
9	chr3:141145800-141161600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:141146000-141160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:141146000-141160000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:141146000-141160000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:141146200-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:141146600-141160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:141147000-141161200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:141147000-141161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:141147400-141160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:141148600-141160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:141148800-141160000	Weak transcription	NHEK	skin
20	chr3:141148800-141161600	Weak transcription	Brain Germinal Matrix	brain
21	chr3:141148800-141161600	Weak transcription	Spleen	Spleen
22	chr3:141148800-141161800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:141148800-141164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr3:141149400-141164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:141149600-141161200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:141149800-141160000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:141149800-141160000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:141150800-141161200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:141151000-141160000	Weak transcription	Hela-S3	cervix
30	chr3:141153200-141161600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr3:141153200-141164000	Weak transcription	Psoas Muscle	Psoas
32	chr3:141153400-141160400	Weak transcription	Right Atrium	heart
33	chr3:141153600-141160000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:141155000-141161400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:141155400-141161200	Weak transcription	Liver	Liver
36	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
37	chr3:141155800-141160200	Weak transcription	Small Intestine	intestine
38	chr3:141156000-141160000	Strong transcription	NHDF-Ad	bronchial
39	chr3:141156200-141160000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr3:141156200-141161800	Weak transcription	Ovary	ovary
41	chr3:141156400-141161600	Weak transcription	Colonic Mucosa	Colon
42	chr3:141156400-141161800	Weak transcription	Gastric	stomach
43	chr3:141156400-141161800	Weak transcription	Pancreas	Pancrea
44	chr3:141156400-141166600	Strong transcription	Fetal Intestine Large	intestine
45	chr3:141157000-141160800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr3:141157400-141160400	Genic enhancers	A549	lung
47	chr3:141157600-141161600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr3:141157800-141159600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr3:141157800-141160000	Enhancers	Brain Cingulate Gyrus	brain
50	chr3:141157800-141160400	Weak transcription	Right Ventricle	heart

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