Variant report

Variant	rs73869612
Chromosome Location	chr3:141169767-141169768
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141026506..141030618-chr3:141169234..141171603,4	MCF-7	breast:
2	chr3:141030674..141032798-chr3:141168575..141172474,3	K562	blood:
3	chr3:141163698..141166261-chr3:141168947..141171763,3	MCF-7	breast:
4	chr3:141084098..141087550-chr3:141168152..141171297,3	MCF-7	breast:
5	chr3:140949389..140951483-chr3:141169503..141172131,2	K562	blood:
6	chr3:141169710..141171431-chr3:141177334..141179161,2	K562	blood:
7	chr3:141164105..141166380-chr3:141168817..141173824,4	K562	blood:
8	chr3:141160372..141162712-chr3:141168318..141171011,2	MCF-7	breast:
9	chr3:141082713..141089087-chr3:141169228..141173800,5	K562	blood:
10	chr3:141165442..141167076-chr3:141168884..141170574,2	K562	blood:
11	chr3:141030651..141031191-chr3:141169108..141170020,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction
ENSG00000249540	Chromatin interaction
ENSG00000249417	Chromatin interaction
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2291601	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34462603	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3732867	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732868	0.94[ASN][1000 genomes]
rs3755767	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3773839	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55951689	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61732448	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795622	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6800247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73869618	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73872729	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7624021	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637336	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637458	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7637802	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9682548	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141132200-141171000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:141155400-141170800	Weak transcription	Fetal Thymus	thymus
3	chr3:141160400-141174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:141162400-141170800	Weak transcription	Stomach Mucosa	stomach
5	chr3:141162600-141171200	Weak transcription	Thymus	Thymus
6	chr3:141163000-141174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:141163600-141171200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:141163600-141171200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:141164000-141174000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:141164200-141170800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr3:141164200-141173600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:141164200-141176400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:141164400-141170600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:141164400-141171000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr3:141164400-141171200	Weak transcription	Primary T cells from cord blood	blood
16	chr3:141164400-141173200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:141164400-141173600	Weak transcription	Colonic Mucosa	Colon
18	chr3:141164600-141169800	Weak transcription	Right Ventricle	heart
19	chr3:141164600-141173000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:141164600-141173600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr3:141164800-141170600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:141164800-141170600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr3:141164800-141170600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:141164800-141170600	Weak transcription	Fetal Intestine Small	intestine
25	chr3:141164800-141170800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:141164800-141170800	Weak transcription	Fetal Kidney	kidney
27	chr3:141164800-141171200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:141164800-141173000	Weak transcription	Gastric	stomach
29	chr3:141164800-141173400	Weak transcription	Brain Substantia Nigra	brain
30	chr3:141164800-141174400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr3:141165000-141173800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr3:141165800-141170600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:141166000-141169800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:141166000-141170600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr3:141166400-141170800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:141166400-141173600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr3:141166600-141170600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr3:141166600-141170600	Weak transcription	HepG2	liver
39	chr3:141166600-141170800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:141166600-141170800	Weak transcription	Brain Angular Gyrus	brain
41	chr3:141166600-141170800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr3:141166600-141170800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:141166600-141170800	Weak transcription	Small Intestine	intestine
44	chr3:141166600-141171200	Weak transcription	Brain Anterior Caudate	brain
45	chr3:141166600-141171200	Weak transcription	Fetal Intestine Large	intestine
46	chr3:141166600-141171200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr3:141166600-141171800	Weak transcription	HSMMtube	muscle
48	chr3:141166600-141172600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr3:141166600-141173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:141166600-141173600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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