Variant report

Variant	rs7637336
Chromosome Location	chr3:141181684-141181685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141179479..141182374-chr3:141204762..141206399,2	MCF-7	breast:
2	chr3:141120677..141122286-chr3:141181559..141183059,2	MCF-7	breast:
3	chr3:141179908..141182127-chr3:141182376..141185079,2	K562	blood:

Variant related genes	Relation type
ENSG00000155903	Chromatin interaction
ENSG00000177311	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2291601	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34462603	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732867	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732868	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs3755767	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3773839	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55951689	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61732448	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795622	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6800247	1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73869612	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73869618	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73872729	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7624021	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624941	0.82[YRI][hapmap]
rs7637458	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7637802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682548	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141168600-141181800	Weak transcription	Aorta	Aorta
2	chr3:141174200-141182200	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:141174200-141182400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:141174200-141182400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:141176800-141183600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:141177000-141183800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr3:141177000-141184000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:141177000-141189600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:141178000-141184200	Weak transcription	NHLF	lung
10	chr3:141178000-141188200	Weak transcription	NHDF-Ad	bronchial
11	chr3:141179400-141183800	Weak transcription	NH-A	brain
12	chr3:141179600-141182400	Weak transcription	A549	lung
13	chr3:141179600-141183800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:141179600-141184000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:141179600-141184000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:141179600-141184000	Weak transcription	Osteobl	bone
17	chr3:141180800-141181800	Enhancers	Primary B cells from peripheral blood	blood
18	chr3:141180800-141182400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:141181000-141181800	Enhancers	GM12878-XiMat	blood
20	chr3:141181000-141182200	Enhancers	HepG2	liver
21	chr3:141181400-141184400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:141181600-141182600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links