Variant report

Variant	rs16851562
Chromosome Location	chr3:141361366-141361367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16851513	1.00[AMR][1000 genomes]
rs16851589	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851594	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3732867	1.00[AMR][1000 genomes]
rs3732868	1.00[AMR][1000 genomes]
rs58556651	1.00[AMR][1000 genomes]
rs61732448	1.00[AMR][1000 genomes]
rs72990334	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141360600-141362800	Weak transcription	Placenta	Placenta
2	chr3:141360800-141361400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:141360800-141361800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr3:141361000-141361400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:141361000-141361600	Enhancers	HepG2	liver
6	chr3:141361000-141361800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:141361000-141363800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:141361000-141364000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:141361200-141361400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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