Variant report

Variant	rs16851513
Chromosome Location	chr3:141344302-141344303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141337365..141343869-chr3:141344227..141348794,9	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16851562	1.00[AMR][1000 genomes]
rs16851589	1.00[AMR][1000 genomes]
rs16851594	1.00[AMR][1000 genomes]
rs295308	0.98[AFR][1000 genomes]
rs3732867	1.00[AMR][1000 genomes]
rs3732868	1.00[AMR][1000 genomes]
rs58556651	1.00[AMR][1000 genomes]
rs61732448	1.00[AMR][1000 genomes]
rs72990334	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141330400-141344600	Weak transcription	NHLF	lung
2	chr3:141332000-141344600	Weak transcription	NHDF-Ad	bronchial
3	chr3:141332400-141344400	Weak transcription	Osteobl	bone
4	chr3:141332400-141345800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:141342600-141346000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:141343200-141344400	Weak transcription	Fetal Intestine Large	intestine
7	chr3:141343600-141344800	Enhancers	HepG2	liver
8	chr3:141343800-141344400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:141343800-141344600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:141343800-141345000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:141344000-141345800	Enhancers	HMEC	breast
12	chr3:141344200-141344400	Enhancers	NH-A	brain
13	chr3:141344200-141344600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:141344200-141344600	Enhancers	Spleen	Spleen
15	chr3:141344200-141344800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:141344200-141344800	Enhancers	HSMM	muscle
17	chr3:141344200-141345000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:141344200-141345000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:141344200-141345200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:141344200-141345800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:141344200-141345800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:141344200-141346600	Enhancers	Ovary	ovary

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